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Syllabus 2022-23 - 10413002 - Microbiology Applied to the Environment (Microbiología aplicada al medio ambiente)

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  • Level 1: Tutorial support sessions, materials and exams in this language
  • Level 2: Tutorial support sessions, materials, exams and seminars in this language
  • Level 3: Tutorial support sessions, materials, exams, seminars and regular lectures in this language
DEGREE: Grado en Ciencias Ambientales
FACULTY: FACULTY OF EXPERIMENTAL SCIENCES
ACADEMIC YEAR: 2022-23
COURSE: Microbiology Applied to the Environment
SYLLABUS
1. COURSE BASIC INFORMATION
NAME: Microbiology Applied to the Environment
CODE: 10413002 ACADEMIC YEAR: 2022-23
LANGUAGE: English LEVEL: 2
ECTS CREDITS: 6.0 YEAR: 4 SEMESTER: PC
2. LECTURER BASIC INFORMATION
NAME: MARTÍNEZ CAÑAMERO, MAGDALENA
DEPARTMENT: U130 - CIENCIAS DE LA SALUD
FIELD OF STUDY: 630 - MICROBIOLOGÍA
OFFICE NO.: B3 - 259 E-MAIL: canamero@ujaen.es P: 953212701
WEBSITE: http://www10.ujaen.es/conocenos/departamentos/ciesal/area-de-microbiologia
ORCID: https://orcid.org/0000-0003-3241-0066
LANGUAGE: English LEVEL: 2
NAME: ANDÚJAR TENORIO, NATALIA
DEPARTMENT: U130 - CIENCIAS DE LA SALUD
FIELD OF STUDY: 630 - MICROBIOLOGÍA
OFFICE NO.: B3 - 207-B3 E-MAIL: nandujar@ujaen.es P: 953212381
WEBSITE: -
ORCID: -
LANGUAGE: English LEVEL: 2
3. CONTENT DESCRIPTION

LECTURES L1. Microorganisms and environment. Introduction.Microorganisms as biofactories of environmental interest. L2.Methods of microbial studies. Microbial analysis techniques appliedto environment. L3. Influence of microorganisms in their bioticsurroundings. Microorganisms in their natural environment. Air.Aquatic environments. Biofilms. Lithosfere. Interactions amongmicrobial populations. Microorganisms and plants. Microorganism andanimals. L4. Applications of microorganisms to waste treatment. -Microbiological Treatment of solid waste. - Microbiologicaltreatment of liquid waste. L 5. Applications of microorganisms inprocesses of bioremediation, and the development of bioindicatorsand biosensors. Methods of measurement of the environmental impactof xenobiotics. Microbial bioremediation. L 6. Applications ofmicroorganisms in the recovery of metals and energy, biomass, andproduction of biofuels, detergents and bioplastics. L 7.Microbiological control of plagues. L8. Microorganisms as causativeagent biodeterioration. Microorganisms as polluting agents. Conceptof biodeterioration. Biodeterioration of stone. Biodeterioration ofmetal. Biodeterioration of wood and other materials.

This syllabus is related to the sustainable development goals of the United Nations (SDG). Lectures 1, 2 y 3, will reinforce 1.4; 7.A; 9.5; 11.4; 12.8; 12.A and 13.3. Lectures 4, 5 y 6 are related to SDG 3.9; 6.1; 6.3; 6.4; 7.2; 7.A; 9.2; 9.4; 11.6; 12.4; 12.5. Lectures 7 and 8 with SDG 2.4; 11.4; 12.2; 12.3; 15.1; 17.7

4. COURSE DESCRIPTION AND TEACHING METHODOLOGY

- Training activity: Lectures (3.0 ECTS): Presentation by thefaculty of the contents of the teaching units of the coursepromoting discussion and active participation of students. It willuse new technologies to promote student access to the virtualplatform where educational materials are available (as summaries ofthe lectures). This activity will provide the skills related tocompetencies 1, 2 and 4.

- Training activity: Laboratory Practices (2.7 ECTS). Work willproceed in small groups in the Microbiology laboratory practices.The teacher will explain the fundamentals and procedure of eachpractice. Students, with the support of a laboratory portfolio withthe main experimental procedures, will achieve results that willhave to be analyzed and discussed. This activity will develop theskills competence number 3, the development of job skills in alaboratory of Microbiology and interpretation of the results ofmicrobiological analysis. - Training activity: Group tutorials (0.3ECTS) There will be specialized tutorials in order to guidestudents in monitoring tutored. This will also facilitate theacquisition of teamwork skills, knowledge and ability to consultspecialized literature sources, and synthesize them. 

 

Students with special educational needs should contact the Student Attention Service (Servicio de Atención y Ayudas al Estudiante) in order to receive the appropriate academic support

5. ASSESSMENT METHODOLOGY

A system of assessments will be used where the final result is given by the sum of the scores obtained in the previous sections. It is mandatory to have attended the laboratory exercises. The term paper will evaluate the competences CB3, CB4, CB5 yCE2. The oral presentation will allow us to evaluate thecompetences CB3, CB4 y CE2. Finally, competences CB5 y CT24 will beassesed through continuous evaluation, mainly during the laboratory exercises.

 

6. BOOKLIST
MAIN BOOKLIST:
  • Microbial ecology: fundamentals and applications Ronald M. Atlas, Richard Bartha. Edition: 4th ed. Author: Atlas, Ronald M.. Publisher: Addison-Wesley Longman  (Library)
  • Environmental microbiology [electronic resource] [edited by] Raina M. Maier, Ian L. Pepper, Charles P. Gerba.. Edition: 2nd ed.. Author: Maier, Raina M.. Publisher: Elsevier Academic Press  (Library)
  • Microbial ecology [electronic resource] : an evolutionary approach J. Vaun McArthur.. Edition: -. Author: McArthur, J. Vaun.. Publisher: Elsevier, AP  (Library)
  • Environmental microbiology: a laboratory manual Ian L. Pepper, Charles P. Gerba, Jeffrey W. Brendecke. Edition: -. Author: Pepper, Ian L.. Publisher: Academic Press  (Library)
ADDITIONAL BOOKLIST:
  • Nature reviews. Microbiology (Online). Edition: -. Author: Nature Publishing Group.. Publisher: Nature Pub. Group  (Library)
  • Brock biology of microorganisms Michael T. Madigan, Kelly S. Bender, Daniel H. Buckley, W. Matthew Sattley, David A. Stahl. Edition: 15th ed. Global ed. Author: Madigan, Michael T., coaut. Publisher: Pearson ;  (Library)
8. VIRTUAL / CLASSROOM TEACHING SCENARIO

 

Training activity:

 

In situ/online

Description

30 lectures

Online

Presentation by the faculty of the contents of the teaching units of the course, promoting discussion and active participation of students. This will be face to face unless any other indication from the Dean and the risk management office.

10 laboratory sessions of 2h each and 8h of field trips, most probably split into two outings.

In situ in a percentage that will be subdued to the Risk Management Office indications.

Students will divide in as many teams as physical posts are allowed in the laboratory. Students will attend in turns in the in situ classes and will use the rest of the training estimated time in online videoconferences with their team mates in order to succeed in performing all the tasks and experiments indicated by the teacher. Each team will later submit a joint paper.

Tutorials

In situ + Online

Tutorial sessions will be personalized and performed online or in campus according to the different scenarios and students' needs.

 

II. System of assessment

There will be a continuous assessment throughout the course through delivery of activities, both theoretical and practical, by students, in person or through email or the ILIAS Virtual Teaching Platform at the University of Jaén, which will account for 80% of the final grade. There will also be a synchronous final test ion campus or online through the Platform or the Google Forms application, depending on availability, with the support of Google Meets, on the date established by the Faculty of Experimental Sciences for each of the official calls, which will represent 20% of the final grade.

III. Resources.

The online resources provided by the University of Jaén (Virtual Teaching Platform, Videoconference through GoogleMeet, other applications in the Google environment: Docs, Slides, Calendar, Drive) will be used in order to encourage student participation, as well as electronic resources available in the library of the University of Jaén or freely available on the internet.

9. VIRTUAL TEACHING SCENARIO

Training activity:

 

In situ/online

Description

30 lectures

Online

 Presentation online by the faculty of the contents of the teaching units of the course, promoting discussion and active participation of students.

14 laboratory sessions, two hours each.

Online

Substitution of the 12 laboratory sessions for online training activities, preferably synchronously, with less than 30% asynchronously through training videos that would replace the excursions

Tutorials

Online

All tutorials will take place online, either synchronously or asynchronously.

 

II. System of assessment

There will be a continuous assessment throughout the course through delivery of activities, both theoretical and practical, by students through email or the Virtual Teaching Platform at the University of Jaén, which will account for 80% of the final grade. There will also be a synchronous final test online through the Platform or the Google Forms application, depending on availability, with the support of Google Meets, on the date established by the Faculty of Experimental Sciences for each of the official calls, which will represent 20% of the final grade.

III. Resources.

The online resources provided by the University of Jaén (Virtual Teaching Platform, Videoconference through GoogleMeet, other applications in the Google environment: Docs, Slides, Calendar, Drive) will be used in order to encourage student participation, as well as electronic resources available in the library of the University of Jaén or freely available on the internet.

DATA PROTECTION CLAUSE (on line exams)

Institution in charge of data processing: Universidad de Jaén, Campus Las Lagunillas, s/n, 23071 Jaén

Data Protection Delegate: dpo@ujaen.es

Purpose: In accordance with the Universities Law and other national and regional regulations in force, carrying out exams and assessment tests corresponding to the courses students are registered in. In order to avoid frauds while sitting the exam, the exam will be answered using a videoconference system, being able the academic staff of the University of Jaén to compare and contrast the image of the person who is answering the exam with the student's photographic files. Likewise, in order to provide the exam with evidential content for revisions or claims, in accordance with current regulation frameworks, the exam will be recorded and stored.

Legitimacy: compliance with legal obligations (Universities Law) and other national and regional regulations currently in force.

Addressees: service providers who are the owners of the platforms where the exams are carried out and with whom the University of Jaén has signed the corresponding data access contracts.

Storage periods: those established in current in force regulations. In the specific case of exam videoconference recordings, not before the examination records and transcripts are closed or the exam can still be reviewed or challenged.

Rights: you can exercise your right of access, amendment, cancellation, opposition, suppression, limitation and portability by sending a letter to the postal or electronic address indicated above. In the event that you consider that your rights have been violated, you may submit a complaint to the Andalusian Council for Transparency and Data Protection www.ctpdandalucia.es

CLASS RECORDING CLAUSE PERSONAL DATA PROTECTION

Person in charge: Universidad de Jaén, Paraje Las Lagunillas, s/n; Tel.953 212121; www.ujaen.es

Data protection delegate (DPO): TELEFÓNICA, S.A.U. ; Email: dpo@ujaen.es

Procedure aim: To manage proper recordings of teaching sessions with the aim of facilitating learning process under a multimodal and/or online teaching

Period for record storage: Images will be kept during legal term according to regulations in force

Legitimacy: Data will be managed according to legal regulations (Organic Law 6/2001, December 21, on Universities) and given consent provided by selecting corresponding box in legal admission documents

Data recipients (transfers or assignments): Any person allowed to get access to every teaching modality

Rights: You may exercise your rights of access, rectification, cancellation, portability, limitation of processing, deletion or, where appropriate, opposition. To exercise these rights, you must submit a written request to the Information, Registration and Electronic Administration Service of the University of Jaen at the address above, or by e-mail to the address above. You must specify which of these rights you are requesting to be satisfied and, at the same time, you must attach a photocopy of your ID card or equivalent identification document. In case you act through a representative, legal or voluntary, you must also provide a document that proves this representation and identification. Likewise, if you consider that your right to personal data protection has been violated, you may file a complaint with the Andalusian Data Protection and Transparency Council www.ctpdandalucia.es