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Syllabus 2022-23 - 10211006 - Lab Methods and Instruments (Métodos e instrumentación de laboratorio)
- Level 1: Tutorial support sessions, materials and exams in this language
- Level 2: Tutorial support sessions, materials, exams and seminars in this language
- Level 3: Tutorial support sessions, materials, exams, seminars and regular lectures in this language
DEGREE: | Grado en Biología |
FACULTY: | FACULTY OF EXPERIMENTAL SCIENCES |
ACADEMIC YEAR: | 2022-23 |
COURSE: | Lab Methods and Instruments |
NAME: Lab Methods and Instruments | |||||
CODE: 10211006 | ACADEMIC YEAR: 2022-23 | ||||
LANGUAGE: English | LEVEL: 2 | ||||
ECTS CREDITS: 6.0 | YEAR: 1 | SEMESTER: PC |
NAME: VALDERRAMA RODRÍGUEZ, RAQUEL | ||
DEPARTMENT: U103 - BIOLOGÍA EXPERIMENTAL | ||
FIELD OF STUDY: 060 - BIOQUÍMICA Y BIOLOGÍA MOLECULAR | ||
OFFICE NO.: B3 - 341 | E-MAIL: ravalde@ujaen.es | P: 953-212768 |
WEBSITE: ravalde@ujaen.es | ||
ORCID: https://orcid.org/0000-0003-2253-0101 | ||
LANGUAGE: English | LEVEL: 2 | |
NAME: BUENO GONZÁLEZ, MILAGROS | ||
DEPARTMENT: U102 - BIOLOGIA ANIMAL, BIOL.VEGETAL Y ECOLOGIA | ||
FIELD OF STUDY: 412 - FISIOLOGÍA VEGETAL | ||
OFFICE NO.: B3 - 143 | E-MAIL: mbueno@ujaen.es | P: 953-212140 |
WEBSITE: - | ||
ORCID: https://orcid.org/0000-0002-3079-5380 | ||
LANGUAGE: English | LEVEL: 2 | |
NAME: ARANDA CAÑO, LORENA | ||
DEPARTMENT: U103 - BIOLOGÍA EXPERIMENTAL | ||
FIELD OF STUDY: 060 - BIOQUÍMICA Y BIOLOGÍA MOLECULAR | ||
OFFICE NO.: B3 - B3-078 | E-MAIL: laranda@ujaen.es | P: - |
WEBSITE: laranda@ujaen.es | ||
ORCID: - | ||
LANGUAGE: English | LEVEL: 2 |
Theory Program
1. Preparation of materials and reagents. General methods for processing biological samples. Safety in the laboratory.
2. Spectrophotometry. The spectrophotometer: General concepts. Absorption spectrum. Lambert-Beer law. Spectrofluorimetry. Applications.
3. Chromatography: General concepts. Chromatography types. Column chromatographies. Applications.
4. Electrophoresis: General concepts. Electrophoresis types: acrylamide gel electrophoresis (PAGE) under native and denaturing conditions (SDS-PAGE), and agarose gel electrophoresis. Applications.
5. Cell culture. Necessary equipment. Culture media and optimization. pH control. Techniques for cell cultures. Contamination.
6. Plant culture under controlled conditions.In vitro culture of plants. Micropropagation. Organogenesis and embryogenesis. Hydroponics. Types. Substrates used.
7. Processing of samples for microscopic observation. Fixers. Microtomy and ultramicrotomy. Light and electron microscopy.
8. Tissue staining techniques and observation methods. Composition and types of dyes. Mechanisms of action. Types of staining. Stain for electron microscopy. Cytological methods. Special staining techniques.
Lessons 1-4 will be taught by the Biochemistry and Molecular Biology Area, lessons 5-8 will be taught by the Plant Physiology Area.
Practice Program
1. Identification and handling of general material and equipment of laboratory. Preparation of reagents and buffers. pH determination.
2. Processing of biological samples. Homogenization and differential centrifugation.
3. Spectrophotometry. Absorption spectrum of a substance. relationship between concentration and absorbance.
4. Flat chromatography and gel filtration.
5. Agarose gel and polyacrylamide gel electrophoresis (PAGE).
6. Preparation of media for in vitro culture of plants I. Preparation of stock solutions. MS and DKW media.
7. Preparation of media for in vitro culture of plants II. Specific media for callus culture, embryo rescue and organogenesis in various plant tissues.
8. Growing in vitro cultured callus and vegetative micropropagation of mature embryos. Management of Neubauer chamber and cell counting technique.
9. Processing plant and animal tissue samples I. Live tissues: vital dyes and optical microscope observation.
10. Preparation of plant and animal tissue sections II. Fixation, embedding, microtomy, staining, assembly and microscope observation.
Practices 1-5 will be taught by the Biochemistry and Molecular Biology Area, Practices 6-10 will be taught by the Plant Physiology Area.
Seminar Program
- Seminar 1: Resolution of
problems using different concentration units. Theoretical
calculations for the preparation of buffer solutions.
- Seminar 2: Review of acquired knowledge related to "in vitro" cultures and optical and electronic microscopy.
These contents connect with the United Nations sustainable development goals (SDGs). The eminently technical and practical character of this subject will reinforce SDGs 3, 6 and 9. The critical spirit, basic for achieving SDG 4, will be fostered.
The course consists of 16 sessions of lectures in large group (1 hour each). In the first 8 sessions, topics from 1 to 4 lessons will be explained , and in the following 8 sessions, topics from 5 to 8 lessons will be taught.
In addition, students must attend to 10 sessions of laboratory practices in small group (4 hours each). After each session, students must submit a questionnaire to the teacher where calculations and results obtained in the corresponding session will be collected. Five Practices will be taught by the Biochemistry and Molecular Biology Area and the other five sessions will be taught by the Plant Physiology Area.
And finally, 2 seminars (1 hour each) will be taught in the classroom in small group in order to solve activities related to the theoretical part of the course.
Students with special educational needs should contact the Student Attention Service (Servicio de Atención y Ayudas al Estudiante) in order to receive the appropriate academic support
The theoretical exam will have two parts corresponding to the lessons 1-4 and 5-8. It will be necessary to have a minimum calification of 5 points in each part of the theorical exam in order to consider the califications obtained in the other activities carried out in the subject.
Attendance to Laboratory classes and the completion of the Practice Notebook are mandatory and indispensable to pass the course. The calification of the Practice Notebook will be a 10% of the overall rating of the subject and the practical exam will represent a 30%.
The practical exam will have two parts corresponding to the practices 1-5 and 6-10. It will be necessary a minimum calification of 5 points in each part of the practical exam in order to consider them to calculate the final calification of the subject.
If the subject is not approved as a whole in the Ordinary call 1, the grades of the exams with more than 5 points will be saved only until the Extraordinary call 2. In this second call, students will repeat the exams of the failed parts. After this last call, students who do not pass all the exams of the subject (more than 5 points of 10) will have to take it again the following year.
- Plant tissue culture: theory and practice, a revised edition. Edition: -. Author: Bhojwani, S. S.. Publisher: Amsterdam [etc.]: Elsevier Science, 1996 (Library)
- Principles and techniques of biochemistry and molecular biology. Edition: 6th ed. Author: -. Publisher: Cambridge: Cambridge University Press, 2005 (Library)
- At the bench: a laboratory navigator. Edition: Updated ed.. Author: Barker, Kathy, 1953-. Publisher: Cold Spring Harbor (New York): Cold Spring Harbor Laboratory Press, 2005. (Library)
- Plant tissue culture [Recurso electrónico] : techniques and experiments. Edition: 3rd ed. Author: Smith, Roberta H. Publisher: London ; Waltham, MA : Academic Press, ©2013 (Library)
1. COURSE DESCRIPTION AND TEACHING METHODOLOGY
Formation activities |
Format (classroom/ online) |
Teaching methodology description |
16 Lecture sessions |
Face-to-face, as long as the social and health conditions allow it |
16 One-hour master class sessions taught to the large group according to the Schedule published on the Faculty of Experimental Sciences website. |
2 Solving problems/ exercises sessions |
In the classroom, as long as the social and health conditions allow it |
2 One-hour seminar sessions taught in the classroom by the teacher to the small groups according to the Schedule published on the Faculty of Experimental Sciences website. |
10 Practical sessions in specialized labs |
In the classroom, as long as the social and health conditions allow it |
10 Four-hours practical sessions in teaching laboratories.
In
the event that the capacity of laboratories would not
allow the access of the entire groups, they would be subdivided
into two subgroups and 2 options would be applied:
Option 1. Practices 1-5.
Rotation of the subgroups and retransmission of the practical
classes to the rest of the group as long as the necessary
audiovisual means are available.
Option 2. Practices 6-10.
The 4 hours assigned to each practical session would be subdivided
into two 2-hour bands. One half of the small group would attend the
first time slot and the other half of the subgroup the second.
The schedule published on the FCC Experimentales website will be
followed.
|
Collective tutoring |
In the classroom, as long as the social and health conditions allow it |
Collective tutoring to the large group if it is necessary |
2. ASSESSMENT METHODOLOGY
Ordinary Convocatory
Assessment probe |
Format (classroom/ online synchronous or asynchronous) |
Description |
Percentage |
Assessment of theoretical knowledge |
Classroom |
The theory exam will consist of two parts corresponding to the blocks of lessons 1-4 and 5-8. It will be necessary to obtain a minimum grade of 5 points in each part of the theory exam in order to consider the grade obtained in the rest of activities carried out in the subject. |
50% |
Assessment of the activities proposed in the seminar classes |
Presentation of activities within the established period |
The activities carried out in person in the seminar clases will be graded. Students will present the activities to the teacher for correction. |
10% |
Laboratory practices |
Presentation of practice questionnaires in electronic format within the established period
Classroom |
Attendance at all the practice sessions as well as the presentation of the practice questionnaires are mandatory and essential to pass the course. The qualification of the practice quiestionnaires will suppose 10% of the global qualification of the subject and the practical exam will represent 30%. The practice exam will consist of two parts corresponding to practice lessons 1-5 and 6-10. A mínimum grade of 5 points is required in each part of the practical exam in order to consider these marks together with those obtained in the seminar clases, practical questionnaires and theory exams to carry out the weighted calculation of the final grade. |
40% |
If the course is not approved in the Ordinary 1 convocatory, the marks of the exams passed will be saved only for the Extraordinary 2. If students don´t pass the final exams (more than 5 point of 10), they will have to repeat all the aspects to be evaluated again in the next year.
Extraordinary convocatory
Assessment probe |
Format (classroom/ online synchronous or asynchronous) |
Description |
Percentage |
Assessment of theoretical knowledge |
Classroom |
The same as Ordinary Convocatory |
50% |
Assessment of the activities proposed in the seminar classes |
Presentation of activities within the established period |
The same as Ordinary Convocatory |
10% |
Laboratory practices |
Presentation of practice questionnaires within the established period
Classroom |
The same as Ordinary Convocatory
|
40% |
3. RESOURCES
- ILIAS platform for virtual teaching at the University of Jaén to provide teaching materials to students.
- Email from the UJA to send notices to the students and to attend asynchronous individual tutorials.
- Bibliographic resources from the Library of the University of Jaén ( https://www.ujaen.es/servicios/biblio ).
In
the event that the socio-sanitary situation forces to
carry out teaching activities in a non-face-to-face format, the
following resources will be used, in addition to the above:
- Google Meet to conduct teaching videoconferences and individual and group tutoring, all synchronously.
- Google Forms to carry out continuous assesment activities and exams.
- Platform for virtual teaching at the University of Jaén to carry out forms and exams.
- COURSE DESCRIPTION AND TEACHING METHODOLOGY
Formation activities |
Format (classroom/ online) |
Teaching methodology description |
16 Lecture sessions |
Online |
16 One-hour master class sessions taught synchronously and online via videoconference by the teacher to the large group according to the Schedule published on the Faculty of Experimental Sciences website. |
2 Solving problems/ exercises sessions |
Online |
2 One-hour seminar sessions taught synchronously and online via videoconference by the teacher to the small groups according to the Schedule published on the Faculty of Experimental Sciences website. |
10 Practical sessions in specialized labs |
Online |
10 Four-hours practical sessions taught synchronously and online via videoconference by the teacher to the small groups according to the Schedule published on the Faculty of Experimental Sciences website. During those 4 hours, in addition to the explanation of each practical session, the students will be provided with the numerical results and images necessary to complete, also during that time, the questions contained in the Practice Guide. |
Collective tutoring |
Online |
If necessary, collective tutoring to the large group will be online (synchronous and asynchronously). |
2. ASSESSMENT METHODOLOGY
Ordinary Convocatory
Assessment probe |
Format (classroom/ online synchronous or asynchronous) |
Description |
Percentage |
Assessment of theoretical knowledge |
Online synchronous |
Online forms made up of test questions and short answer questions using the Google Forms application and/or the UJA platform. The theory exam will consist of two parts corresponding to the blocks of lessons 1-4 and 5-8. It will be necessary to obtain a minimum grade of 5 points in each part of the theory exam in order to consider the grade obtained in the rest of activities carried out in the subject. |
50% |
Assessment of the activities proposed in the online seminar classes |
Presentation of activities in electronic format within the established period |
The activities carried out in the online seminar classes will be graded. Students will present the activities to the teacher through the platform for correction. |
10% |
Online laboratory practices
|
Presentation of practice questionnaires in electronic format within the established period
Practice exam in synchronous online format
|
Attendance to all video calls established for online practice sessions as well as the presentation of the practice questionnaires are mandatory and essential to pass the course. The qualification of the practice quiestionnaires will suppose 10% of the global qualification of the subject and the practical exam will represent 30%. The practice exam will consist of two parts corresponding to practice lessons 1-5 and 6-10. A mínimum grade of 5 points is required in each part of the practical exam in order to consider these marks together with those obtained in the seminar clases, practical questionnaires and theory exams to carry out the weighted calculation of the final grade. |
40% |
If the course is not approved in the Ordinary 1 convocatory, the marks of the exams passed will be saved only for the Extraordinary 2. If students don´t pass the final exams, they will have to repeat all the aspects of the subject in the next year.
Extraordinary Convocatory
Assessment probe |
Format (classroom/ online synchronous or asynchronous) |
Description |
Percentage |
Assessment of theoretical knowledge |
Online synchronous |
The same as Ordinary Convocatory |
50% |
Assessment of the activities proposed in the online seminar classes |
Presentation of activities in electronic format within the established period |
The same as Ordinary Convocatory |
10% |
Online laboratory practices
|
Presentation of practice questionnaires in electronic format within the established period
Practice exam in synchronous online format
|
The same as Ordinary Convocatory |
40% |
- RESOURCES
Adaptation of teaching to the multimodal or mixed and totally online model will be carried out using the following resources:
- Google Meet to conduct teaching videoconferences and individual and group tutoring, all synchronously.
- Google Forms to carry out continuous assesment activities and exams.
- Platform for virtual teaching at the University of Jaén to carry out forms, exams and provide teaching materials to students.
- Email from the UJA to send notices to the students and to attend asynchronous individual tutorials.
- Bibliographic resources from the Library of the University of Jaén ( https://www.ujaen.es/servicios/biblio ).
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Storage periods: those established in current in force regulations. In the specific case of exam videoconference recordings, not before the examination records and transcripts are closed or the exam can still be reviewed or challenged.
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Person in charge: Universidad de Jaén, Paraje Las Lagunillas, s/n; Tel.953 212121; www.ujaen.es
Data protection delegate (DPO): TELEFÓNICA, S.A.U. ; Email: dpo@ujaen.es
Procedure aim: To manage proper recordings of teaching sessions with the aim of facilitating learning process under a multimodal and/or online teaching
Period for record storage: Images will be kept during legal term according to regulations in force
Legitimacy: Data will be managed according to legal regulations (Organic Law 6/2001, December 21, on Universities) and given consent provided by selecting corresponding box in legal admission documents
Data recipients (transfers or assignments): Any person allowed to get access to every teaching modality
Rights: You may exercise your rights of access, rectification, cancellation, portability, limitation of processing, deletion or, where appropriate, opposition. To exercise these rights, you must submit a written request to the Information, Registration and Electronic Administration Service of the University of Jaen at the address above, or by e-mail to the address above. You must specify which of these rights you are requesting to be satisfied and, at the same time, you must attach a photocopy of your ID card or equivalent identification document. In case you act through a representative, legal or voluntary, you must also provide a document that proves this representation and identification. Likewise, if you consider that your right to personal data protection has been violated, you may file a complaint with the Andalusian Data Protection and Transparency Council www.ctpdandalucia.es