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Syllabus 2015-16 - 72512001 - Genomics, Bioinformatics and Systems Biology (Genómica, bioinformática y biología de sistemas)
- Level 1: Tutorial support sessions, materials and exams in this language
- Level 2: Tutorial support sessions, materials, exams and seminars in this language
- Level 3: Tutorial support sessions, materials, exams, seminars and regular lectures in this language
DEGREE: | Máster en Biotecnología y biomedicina |
FACULTY: | Centro de Estudios de Postgrado |
ACADEMIC YEAR: | 2015-16 |
COURSE: | Genomics, Bioinformatics and Systems Biology |
NAME: Genomics, Bioinformatics and Systems Biology | |||||
CODE: 72512001 | ACADEMIC YEAR: 2015-16 | ||||
LANGUAGE: English | LEVEL: 1 | ||||
ECTS CREDITS: 4.0 | YEAR: 1 | SEMESTER: AN |
NAME: ESTEBAN RUIZ, FRANCISCO JOSÉ | ||
DEPARTMENT: U103 - BIOLOGÍA EXPERIMENTAL | ||
FIELD OF STUDY: 050 - BIOLOGÍA CELULAR | ||
OFFICE NO.: B3 - B3-342 | E-MAIL: festeban@ujaen.es | P: 935212760 |
WEBSITE: http://www4.ujaen.es/~festeban/ | ||
ORCID: https://orcid.org/0000-0002-7135-2973 | ||
LANGUAGE: English | LEVEL: 1 |
An introduction to structural genomics: genome sequencing and phylogenetic structure.
An intoriduction to funtional genomics: tools for high-throughput gene expression and gene annotation.
Data Bases in Molecular Genetics:
- Nucleotides: EMBL and Genbank (including dbGSS, dbSTS, dbSNP).
- Proteins: NCBI, Expasy, EMBL; NCBI, RELIBASE, 3Dee.
- Human gene project (Sanger), and other sequenced genomes (S. cerevisiae, B. subtilis, A. Thaliana, etc).
- References (PubMed).
- OMIM (On line Mendelian Inheritance in Man).
DNA and protein sequencing and analysis:
Training in automatical DNA sequencing ADN en secuenciados automático. Sequence analysis (BLAST, FASTA, CLUSTAL, seqaid, DNAsis, GCG).
Other Bioinformatic tools in Molecular Genetics:
- Gene searching (Genscan, BCM search launcher).
- PCR (oligo, Melting).
- ARN (Fold).
- Proteins and motifs (EMBOSS, Prosite, Expasy).
- GWAS tools
Data analysis and modelling:
- Microarrays data analysis. (R, NIH DAVID).
- Data integration: multivariate analysis and data mining.
- Molecular networks.
- Systems Biotechnology.
- Systems Biology and Systems Dynamics.
All sessions will be mainly practical using computers (with a general theoretical introduction). Students have to write an essay also discussed in an oral presentaion.
Students with special educational needs should contact the Student Attention Service (Servicio de Atención y Ayudas al Estudiante) in order to receive the appropriate academic support
Quality; format; references; innovation; grammar; style. Knowledge acquisition.
- Analysis of microarray gene expression data [Recurso electrónico]. Edition: -. Author: Lee, Mei-Ling Ting. Publisher: Boston : Kluwer Academic, c2004. (Library)
- Teoría y ejercicios prácticos de dinámica de sistemas. Edition: [3ª̇ ed. revisada y ampliada]. Author: Martín García, Juan. Publisher: Barcelona : El autor, 2011 (Library)
- Modern Multivariate Statistical Techniques [Recurso electrónico] : Regression, Classification, and M. Edition: -. Author: Izenman , Alan. Publisher: New York, NY : Springer-Verlag New York, 2008. (Library)
- Systems biologY [Recurso electrónico]. Edition: -. Author: -. Publisher: Weinheim : Wiley-Blackwell, 2012 (Library)
- Genetics: analysis of genes and genomes. Edition: 7th ed.. Author: Hartl, Daniel L.. Publisher: Sudbury : Jones and Bartlett, 2009. (Library)