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Syllabus 2013-14 - 10312016 - Synthesis and Structural Determination of Organic Compounds Lab (Laboratorio de síntesis y determinación estructural de compuestos orgánicos)
- Level 1: Tutorial support sessions, materials and exams in this language
- Level 2: Tutorial support sessions, materials, exams and seminars in this language
- Level 3: Tutorial support sessions, materials, exams, seminars and regular lectures in this language
DEGREE: | Grado en Químicas |
FACULTY: | FACULTY OF EXPERIMENTAL SCIENCES |
ACADEMIC YEAR: | 2013-14 |
COURSE: | Synthesis and Structural Determination of Organic Compounds Lab |
NAME: Synthesis and Structural Determination of Organic Compounds Lab | |||||
CODE: 10312016 | ACADEMIC YEAR: 2013-14 | ||||
LANGUAGE: English | LEVEL: 1 | ||||
ECTS CREDITS: 6.0 | YEAR: 3 | SEMESTER: SC |
NAME: COBO DOMINGO, JUSTO | ||
DEPARTMENT: U128 - QUÍMICA INORGÁNICA Y ORGÁNICA | ||
FIELD OF STUDY: 765 - QUÍMICA ORGÁNICA | ||
OFFICE NO.: B3 - 467 | E-MAIL: jcobo@ujaen.es | P: 953212695 |
WEBSITE: - | ||
ORCID: https://orcid.org/0000-0001-9184-2390 | ||
LANGUAGE: English | LEVEL: 1 | |
NAME: GARCÍA GALLARÍN, MARÍA CELESTE | ||
DEPARTMENT: U128 - QUÍMICA INORGÁNICA Y ORGÁNICA | ||
FIELD OF STUDY: 765 - QUÍMICA ORGÁNICA | ||
OFFICE NO.: B3 - 452 | E-MAIL: cgarcia@ujaen.es | P: 953212186 |
WEBSITE: - | ||
ORCID: https://orcid.org/0000-0001-8455-9837 | ||
LANGUAGE: English | LEVEL: 1 |
- Theoretical Module : Dissertations about the four instrumental methods (UV, IR, NMR and MS) used routinely by organic chemists for structure elucidation .
Section 1.
Introduction
to spectroscopy and spectrometry.
Chapter 1.
Introduction
to spectroscopy.
(1.5
hours): Introduction to structural determination.
The
electromagnetic spectrum.
Interaction
of matter with electromagnetic radiation: General
characteristics.
The
absorption spectra and emission.
Spectrometers
and resolution.
Section 2.
Absorption
spectroscopic techniques.
Chapter 2.
Ultraviolet
and visible spectroscopy.
(2.5
hours): Specific features of ultraviolet spectroscopy (UV) and
visible (V).
Electronic
excitation.
Selection rules.
Energy
absorption: Types of electronic transitions.
Chromophores
and auxocromos.
Instrumentation.
Description
of a visible-ultraviolet spectrum: component parts and
terminology.
Conjugated
compounds, aromatic.
Item 3.
Infrared
Spectroscopy (IR).
(4
hours): Basics: Vibration of diatomic molecules.
Normal
modes of vibration of polyatomic molecules.
Interaction
of matter with infrared radiation.
Instrumentation
and sample preparation.
Infrared
absorption spectra, characteristic frequencies.
Factors
affecting the characteristic
frequency
of
a group.
IR
spectrum regions and types of bonds, analysis of IR spectrum.
Section 3.
Nuclear
Magnetic Resonance Spectrometry.
Chapter 4.
Basics
of Nuclear Magnetic Resonance (NMR).
(5
hours): Introduction to NMR: The nuclear spin,
spin
states
and magnetic field.
Instrumentation.
Chemical
shift and factors that modify it.
Chemical
equivalence.
The intensity of
the signals.
Spin-spin coupling.
Chirality and NMR.
Dynamic Effects in
NMR.
Chapter 5.
Advancing
Nuclear Magnetic Resonance (NMR).
(3
hours): NMR Approach to the "pulses" and the Fourier
transform.
The relaxation: T1 and
T2.
NOE effect.
13C spectroscopy: chemical shift and intensity,
determination of multiplicity.
2D
NMR spectroscopy: homonuclear and heteronuclear, types of
experiments, how to extract information.
Section 4.
Mass spectrometry.
Chapter 6.
Mass
spectrometry (MS).
Fundamentals and
Applications.
(3,5
h): Background:
discrimination
of
charged
fragments based on their relationship "charge / mass".
The
mass spectrometer: overview, ionization chamber, acceleration
system, analyzer, detector and recorder.
Ionization
Techniques: CI, FAB, APCI, ESI, MALDI.
Processes
occurring inside a mass spectrometer: the fragmentations.
The
mass spectrum: general description, component parts and
terminology.
The nitrogen
rule.
Determination
of the molecular formula: exact mass and isotope ratio.
Common
fragmentations.
How to analyze a
mass spectrum.
Section 5.
Systematic
Structural determination of unknown substances.
Chapter
7: Systematic Structural determination of unknown
substances.
(0,5
h) Combined use of various spectroscopic, spectrometric techniques
to solve the structure of a substance.
Practice Module: Experimental multistep synthesis of an
organic compound, including the use of separative and
spectroscopic techniques for structure elucidation
Seminars Module: There are three separate sections:
- Resolution of the proposal exercises
about the theory, with practical examples for the structure
elucidation of organic compounds
- Software and web resources of
utility in this subject.
- Advanced experimental techniques in
organic synthesis
The course is divided in two parts, one dealing with theory of the major instrumental methods used routinely by organic chemists: ultra-violet/visible (UV-VIS), infra-red (IR), nuclear magnetic resonance spectroscopy (NMR), and mass spectroscopy (MS). A concise introduction to the Physics background of each of them, describing how the molecules as well as their fragments interact with electromagnetic radiation will be provided .This information is applied to the determination of chemical structures. The course also includes a simple description of the instrumentation and emphasizes modern methodology throughout, such as the Fourier-transform approach to data analysis.
Each chapter is related with a set of problems to be solved in the seminar lectures to test the understanding of organic spectroscopy.
The second part is related with some practical experiments that the students will carry out in the lab. In these experiments a multistep synthesis of an organic compound is developed. Different experimental and spectroscopic techniques will be used for the setup, separation and structural elucidation of each compound involved in the synthetic pathway.
Students with special educational needs should contact the Student Attention Service (Servicio de Atención y Ayudas al Estudiante) in order to receive the appropriate academic support
Three different aspects will be taken into account for the final mark:
- A final examen to evaluate the degree of knowledge of theoretical-practical concepts. With resolution of practical cases and exercises similar to those done in seminars. (70 %)
- Experimental sessions: evaluation of Report and the going on working in the lab. (15 %)
- Seminars and ongoing work: evaluation of the proposal exercises and practical cases, which will be done individually by each student. (15 %)
TO OVERCOME THE SUBJECT THE LABORATORY PRACTICE MUST BE ATTENDED OBLIGATORY, AND THE CALIFICATION OF THE EXAM SHALL OVERCOME THE 45 %
- Experimental organic chemistry. Edition: -. Author: Palleros, Daniel R.. Publisher: New York [etc.]: John Wiley & Sons, cop. 2000 (Library)
- Multiscale operational organic chemistry: a problem-solving approach to the laboratory course. Edition: 2nd ed. [international edition].. Author: Lehman, John W.. Publisher: Upper Saddle River : Pearson Prentice Hall, cop. 2010. (Library)
- Techniques and experiments for organic chemistry. Edition: 6th ed. Author: Ault, Addison. Publisher: Sausalito: University Science Books, cop. 1998 (Library)
- Theory and practice in the organic laboratory: with microscale and standard scale experiments. Edition: 4th. ed. Author: Landgrebe, John. Publisher: Pacific Grove (California): Brooks-Cole, cop.1993 (Library)
- Microscale organic laboratory : with multistep and multiscale syntheses. Edition: 5th.ed. Author: Mayo, Dana W. Publisher: Hoboken, NJ : John Wiley & Sons, 2011 (Library)
- Experimental organic chemistry: a balanced approach, macroscale and microscale. Edition: -. Author: -. Publisher: New York: W.H. Freeman and Company, cop. 1998 (Library)
- Experimental Organic Chemistry: a miniscale and microscale approach. Edition: 4th ed. Author: Gilbert, John C.. Publisher: Belmont : Thomson, cop. 2006 (Library)
-
Introduction to organic spectroscopy. Edition: 1st published, repr. Author: Harwood, Laurence M.. Publisher: Oxford [etc.]: Oxford University Press, 2005.
- Notes: Manual de introducción teórica a las técnicas espectroscópicas fundamentales usadas en la determinación estructural de compuestos orgánicos
-
Introduction to spectroscopy: a guide for students of organic chemistry. Edition: 3rd ed. Author: Pavia, Donald L.. Publisher: Fort Worth [etc.]: Harcourt College Publishers, cop. 2001.
- Notes: Manual de introducción teórica a las técnicas espectroscópicas fundamentales usadas en la determinación estructural de compuestos orgánicos
-
Organic structural spectroscopy. Edition: Repr. with corr. Author: -. Publisher: Upper Saddle River: Prentice Hall, cop. 2001.
- Notes: Manual de apoyo al módulo teórico
-
Spectrometric identification of organic compounds. Edition: 7th ed. Author: Silverstein, Robert M.. Publisher: New York [etc.]: John Wiley and Sons, cop. 2005.
- Notes: Manual de apoyo al módulo teórico
-
Organic structures from spectra. Edition: 4th ed.. Author: Field, L. D.. Publisher: Chichester : J. Wiley & Sons, cop.2008..
- Notes: Manual de utilidad en resolución de supuestos prácticos de determinación estructural basado en el análisis combinado de espectros uv, ir, rmn y ms.
-
Advanced practical organic chemistry. Edition: 2nd ed., repr. Author: Leonard, J.. Publisher: Cheltenham: Stanley Thornes, 1998.
- Notes: Manual de apoyo en Técnicas experimentales avanzadas en química orgánica